Hi Gabriel,
I know you must be busy so I'll try to be concise. My unit has begun to display 20VDC on both inputs in scope and meter mode. Meter mode also shows that it is reading 6.2Hz as the frequency of the inputs, which are unconnected. Whether or not this was the issue, there was a short from the output of my 7805 to GND (which resulted in the 7805 getting hot, as to be expected) but nothing ever touched the Xproto. I was viewing the output of the AWG at the time on channel 1. The unit seems fine although sometimes the menu is sluggish, and over-writes on top of itself. I have tried a settings restore but this just resets any changes, doesn't fix the problems.
Have you ever seen something like this occur? Please let me know if there's anything else I can try.
EDIT
I used your supplied schematic to do a bit of debugging, I found that the output of the TL064 for the channels is latched high (4.2V), resulting in the 20V readings on the screen, and the AWG output on the TL064 (pin 14) shows no 1khz signal but the microcontroller AWG output (pin 6) shows the 1khz signal fine. This leads me to believe that the TL064 has ended it's life.